SE3740288

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11356
  • Solanum lycopersicum
  • SE3740288
  • CACTA
  • Ca1
  • SL2.40ch07:55513351-55513827
  • TTA
  • ACACTTTGTTTGGATCATTGTTACCCAT

Secondary structure and sequence

TSD    TIR
5'



3'
TT     T                 C    TGTTTCATAA                  ATTTTATTGTTCTG  -   - -  GTAGATACAATGTTTGGCTAGATTGTATTGTTTGTTGTTGTTTAATAATATTTTAATTGTTTGGTTTGATCATATTGTATTGTATTGTAATTTATAAATTTACAAAATATCCTAATTATTCTAGGTAAGTAAGTTTGACTAGATTTAAATAATTAAGATAAAGGGT
  ACACT TGTTTGGATCATTGTTA CCAT          TGTATTGTATTGTATTGT              TA TTG T AT                                                                                                                                                                      
  ||||| ||||||||||||||||| ||||          ||||||||||||||||||              || ||| | ||                                                                                                                                                                      A
  TGTGA ACAAACCTAGTAACAAT GGTA          ACATAACATAACATAGCA              AC GAT T AT                                                                                                                                                                      
AT     T                 A    ----------                  ---------ATGAT  G   G T  AAACAAAACTAACAATGAATTTTACATAACATAACATAACAATTTAAAGCAACAATGCATTGTTACTTTTAGGCATAAAATACCTTGTTGGTTAAACCACACAAGAGTAACAATGAATTAAAGAAAAAGGTTAATATATAAATGTATTATAAAGTCTTATGATAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End