SE3750290

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11358
  • Solanum lycopersicum
  • SE3750290
  • PIF/harbinger
  • To10
  • SL2.40ch12:64554150-64554385
  • TAA
  • AGGGGTCGTTTGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              ----------------     AC AGTTATCCCAGGATAAGTTATCCTAGCGTTAGCTATCCCGGGATAACTTATCCCATATGTATATGGGATAACTTATCCCATCACTAT
  AGGGGTCGTTTGGT                TGGGA  A                                                                                       
  ||||||||||||||                |||||  |                                                                                        
  TCCCCAGCAAACCA                TTGTG  A                                                                                       
AA              CACTCCCTATCTTTAT     -- CCACCCTATTCTTTTATCACAACCCTATTTCAAAAACATAGAACAAACCAACGGTACAAACCCTATTGAATAGGGTAGTAAATATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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