Plant MITE

SE3720297

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11365
Solanum lycopersicum
SE3720297
Mutator
M2
SL2.40ch01:5603251-5603576
TATATATGA
TATATATGAGGGAAAATGCACAAGTACCCCCTCAACCTATGCCCGAAATCCCAAAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTTAGCCTACGTGACACTAGTTTG

Secondary structure and sequence

TSD TIR

5'

3'

        G     A     A                              C  A                                                    A         C          TA         A     G    AAAAAAAAG     CA
 TATATAT AGGGA AATGC CAAGTACCCCCTCAACCTATGCCCGAAATC CA AGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTAT AGTAATTTT TACCCCTTTT  GCCTACGTG CACTA TTTG         TCAAT  
 ||||||| ||||| ||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||  ||||||||| ||||| ||||         |||||   
 GTATATA TCCCT TTACG GTTCATGGGGGAGTTGGATACGGGCTTTAG GT TCTGTGTGAATATGATATGATTCCAGGATAATGGGGGGACTTGAATAAAATA TTATTAAAA ATGGGGAAAA  TGGATGCAC GTGAT GAAC         GGTTA  
A       -     A     G                              A  C                                                    A         A          TC         C     A    ----ACTCG     CT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720297

TATATATGAGGGAAAATGCACAAGTACCCCCTCAACCTATGCCCGAAATCCCAAAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTTAGCCTACGTGACACTAGTTTGAAAAAAAAGTCAATCATCATTGGGCTCACAAGATAGTGCCACGTAGGTCTAAAAGGGGTAAAAAATTATTAATAAAATAAGTTCAGGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGAGATTTCGGGCATAGGTTGAGGGGGTACTTGGGCATTATCCCTATATATGA

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