SE3720298

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11366
  • Solanum lycopersicum
  • SE3720298
  • Mutator
  • M23
  • SL2.40ch12:46166032-46166795
  • AAAAAATTA
  • GGGATAATACTCAATTACCCCCCTAGCCTATACCCAAAATCCCTGCGACACACCTTATCTTTGATGAGGTCCTATTACCCCCTCCAACTTTTTTTTAAAGTAATTAATTATCACTTTCGTGCCTACGTGGCAATAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAAATTA                                                                       C                          A                                      AATC   -AA    GAT TGTTTGTTCAACTCGCGCCGGGACCCACTTTTTCAGCTTTCAAAAAAGTAACTTTTACAATTCCCAAGTTTGAAAAGCTGGCGTTTTATGTTTTCCAAATTAATTTTACCAAAAAAATTAAGTAACAAGGAAAGAAAGAGGGAAAGTGCTGCATGTGTGGATCGATTTCAAAGGTTAAAAATTTGATTTCCAACTGAAATTTGATTTTTGATGTTGGATTT
         GGGATAATACTCAATTACCCCCCTAGCCTATACCCAAAATCCCTGCGACACACCTTATCTTTGATGAGGTC TATTACCCCCTCCAACTTTTTTTTAA GTAATTAATTATCACTTTCGTGCCTACGTGGCAATAAT    TGA   GGTC   G                                                                                                                                                                                                                             
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    |||   ||||   |                                                                                                                                                                                                                             T
         CCCTATTATGGGTTAATGGGGGGATCGGATATGGGTTTTAGGGACGCTGTGTGGAATAGAAACTACTCCAG ATAATGGGGGAGGTTGAAAAAAAATT CATTAATTAATGGTGAAAGCGCGGATGCACCGTTATTA    ACT   GTGG   G                                                                                                                                                                                                                             
ATTAAAAAA                                                                       T                          -                                      --GC   AAA    --- TACATCCCGCGCACTCACATCTAAAACCGATTGTTACTGGTTATTTTCAATCGGTGCACAATTTCGTTAAACATTTTTTTAAGTTTTTATTTAAATAACAAAGAGAGTTTTCGTCAAGAAGAAGGAGAAAACTTTTTTATTGGGTAAAAGTACCAAGAAGTAAAAACTTCTTCGAGGTAGGTAATAGTTGATAGTTTTAGGTTGTAGCTTTTAATTGATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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