SE3730299

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11367
  • Solanum lycopersicum
  • SE3730299
  • hAT
  • Hat5
  • SL2.40ch05:10868065-10868564
  • CTTATGAT
  • TTATGATTAGGGGTGTCAAATGGGC

Secondary structure and sequence

TSD    TIR
5'



3'
C      T        T   --      -------    TGGGTTGAAATTAGAAATATTAAAATGAGTTGAATAGAAATCGGGTTAGGTCTTGACCCGTAAGTTACTTTGGGCTCAAATGGGCTAAAAAAGAGTTGGGTCTTGACTCTTGACCCGACCAATTTGACCCGATTAATCTTAATAATTTAACATATTGATACTTAACTTTTATAATCACAATTTAAATTTCTGTTCAAGATATTTTTATTAAAAAA
 TTATGA TAGGGGTG CAA  ATGGGC       GGGT                                                                                                                                                                                                                       
 |||||| |||||||| |||  ||||||       ||||                                                                                                                                                                                                                       G
 AGTATT ATCCCCAT GTT  TACTTG       ATCC                                                                                                                                                                                                                       
T      C        C   TT      GTTTTGT    ATTGGGCGGGTCGGGCAGGTCTTAAAGTTCTATTAAAGATAACCCAAGTTAGAGTTGAGTAAGTTCGAGTTGGGTAAACTTCTATTAAGAGTTAACTCGGGTTAAGTTAGAAGTTAAAGTTGGGCAAATTTAAAAAATAATTCTATACAAGTATATAACTTCCATACTTAATAATAGACAAGTTGTAGAAAATCCTAAATAGATAAGTAAAGAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End