SE3720305

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11373
  • Solanum lycopersicum
  • SE3720305
  • Mutator
  • M16
  • SL2.40ch03:2774854-2775352
  • AAAAAATAA
  • GGCCAAATACATAAGTAGATTCCTAAACTTGTTGGATTTGTTTCCTCAGGTACCTCAACTACGTCATTTTCCTATTGAATCATTGAACCCCCATAATTTGTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAAATAA         C                         A   G                              C T     A          -                   AAACAAACACCGTTGTCTTATGTGGAACCAGATTTGTGAGGGGAATTGATAGAGGATACATATGTTGTTCCACAAATCATTAGTCCAATTCATAGTGAAAATGTTTGAGAATAATTGTGTTTTACTTAAGTC
         GGCCAAATA ATAAGTAGATTCCTAAACTTGTTGG TTT TTTCCTCAGGTACCTCAACTACGTCATTTT C ATTGA TCATTGAACC CCCATAATTTGTTCCGTTT                                                                                                                                    
         ||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||||||||                                                                                                                                     
         CCGGTTTAT TATTTGTTTAGGGATTTGAACAACC AAA AAGGGAGTCCATGGAGTTGATGCAGTAAAA G TAACT AGTAATTTGG GGGTATTAAACAAGGAAAT                                                                                                                                    
AATAAAAAA         A                         C   A                              A T     C          T                   TTTATGACAACAAACTAAAACTATTCGAAAAGATAAAATTTACAGAAGTAAACACAAGCTTAACATTATTAAAACTAACTTACTTACTTCTGTTTGGCACAATCAGAGTAAACAAAAGATTACACAAGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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