Plant MITE

SE3710317

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11385
Solanum lycopersicum
SE3710317
Tc1/Mariner
St2
SL2.40ch04:39228085-39228365
TA
CTCCTTCCCATTTTATGTGGCAACA

Secondary structure and sequence

TSD TIR

5'

3'

TACTAC    TTC               A  -TT    CAAA   GA   TTAAGAAATAATGAAGATTTTGAAATATTTACCAGAGTGCCCTTCAAAAATGTAAACTAATTTTTCTCTCCCCTCATAAATGTATTAGAATATT
      CTCC   CCATTTTATGTGGCA CA   TGAC    CAC  AGT                                                                                              
      ||||   ||||||||||||||| ||   ||||    |||  |||                                                                                              A
      GAGG   GGTAAAATACACTGT GT   AAGA    AAA  ACC                                                                                              
ATAAAA    CAA               -  TAA    ----   --   AGTTAGGTTTTTTCTTACACTGTAAAAGAATATGCCATTCATAAATTTGTATGTCAAGGAGAAAATGGGAACAACCAGGGTGAATTAAATTTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710317

TACTACCTCCTTCCCATTTTATGTGGCAACATTTGACCAAACACGAAGTTTAAGAAATAATGAAGATTTTGAAATATTTACCAGAGTGCCCTTCAAAAATGTAAACTAATTTTTCTCTCCCCTCATAAATGTATTAGAATATTATCTTTAAATTAAGTGGGACCAACAAGGGTAAAAGAGGAACTGTATGTTTAAATACTTACCGTATAAGAAAATGTCACATTCTTTTTTGGATTGACCAAAAAGAAAATTGTGTCACATAAAATGGAACGGAGAAAATA

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