SE3740324

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11392
  • Solanum lycopersicum
  • SE3740324
  • CACTA
  • Ca3
  • SL2.40ch07:56840349-56840489
  • TGG
  • GCACTACAAGAAAACTGTGAATTACATGGGATTTTCCTAGGATTAGTATGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TG              C            -           -        T     AATAC        CT
  GCACTACAAGAAAA TGTGAATTACAT GGGATTTTCCT AGGATTAG ATGAA     GTAGGAAA  
  |||||||||||||| |||||||||||| ||||||||||| |||||||| |||||     ||||||||  T
  TGTGATGTTCTTTT ATACTTAATGTA CTCTAAAAGGA TTTTAGTC TACTT     CGTCCTTT  
GG              C            A           C        C     AAAAA        TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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