Plant MITE

SE3710325

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11393
Solanum lycopersicum
SE3710325
Tc1/Mariner
St7
SL2.40ch05:61593820-61594075
TA
TACTCCCTCCATTTCAATTTG

Secondary structure and sequence

TSD TIR

5'

3'

     C   CA   C      --  T      CTTTCCTTTTCTGTCCATTTCAA  -  ---- A ------   TCTTTCCCTTGTTGGCAGCTCTTTCATTTCAACACCCCACATGACATGTTTAAGACCACAAGATTAAA
TACTC CTC  TTT AATTTG  GT GTCTTA                       AA AG    A T      GCC                                                                    
||||| |||  ||| ||||||  || ||||||                       || ||    | |      |||                                                                    A
ATGAG GAG  AAG TTAAAC  AT AGACCA                       GA TG    C G      AAA                                                                    
     A   AC   C      AA  -      ------------------AAACT  C  AACC - TGCCTC   TTCTCTCATTTCTACTGAAAACTTAGAACACCAGAATTTAATATCGATACATCTTACATGGTTTATAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710325

TACTCCCTCCATTTCAATTTGGTTGTCTTACTTTCCTTTTCTGTCCATTTCAAAAAGAATGCCTCTTTCCCTTGTTGGCAGCTCTTTCATTTCAACACCCCACATGACATGTTTAAGACCACAAGATTAAAAGATATTTGGTACATTCTACATAGCTATAATTTAAGACCACAAGATTCAAAAGTCATCTTTACTCTCTTAAACTCCGTGCCCAAGTCAGTCAAAACCAGATAAACAAATTCGAACAGAGAGAGTA

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