Plant MITE

SE3720327

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11395
Solanum lycopersicum
SE3720327
Mutator
M9
SL2.40ch11:49982183-49982452
ATATTCAAA
GGCATAATACATA

Secondary structure and sequence

TSD TIR

5'

3'

ATATTCAAA             ----TA   -  TT  ---------   CTCGGCTTTAAATTTTAACTTTGACCTTCAACTTTCGTAATGCACAAACAGACACTTTAACTATCCAACTTTTAAATAAATAAACATATGAGT
         GGCATAATACATA      TTG AA  TC         AAA                                                                                             
         |||||||||||||      ||| ||  ||         |||                                                                                              
         CCGTATTATGTAT      AAG CA  TT         ACG                                                                                             
AAACTTATA             TTATAC   A  --  AAAACCTAC   TATTTATCTGTGAATTTGAACATATTTCAACTTGTTTATTTGTGTGTACAGGATGTACAGTAAAAAAAGGGATGCATATAATACAATACATCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720327

ATATTCAAAGGCATAATACATATATTGAATTTCAAACTCGGCTTTAAATTTTAACTTTGACCTTCAACTTTCGTAATGCACAAACAGACACTTTAACTATCCAACTTTTAAATAAATAAACATATGAGTCCTACATAACATAATATACGTAGGGAAAAAAATGACATGTAGGACATGTGTGTTTATTTGTTCAACTTTATACAAGTTTAAGTGTCTATTTATGCACATCCAAAATTACAGAACATATTTATGTATTATGCCATATTCAAA

Copy Cancel