SE3720333

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11401
  • Solanum lycopersicum
  • SE3720333
  • Mutator
  • M14
  • SL2.40ch04:53465372-53465698
  • TTATAGAAA
  • AAGGAAAAATGCATTACTACCCCCTAGACTATGACCGAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TTATAGA    AA    G   TAC      C                CCAC         C      T                       AAACT    TTTCTTT    A     ATAC       TAG            -TCAA   T   T      CCT
       AAGG  AAAT CAT   TACCCC TAGACTATGACCGAAA    AGAGACACA CTTAAC AAACTAAGATCCTATTACCCCCT     TTTT       TTGT ATTTT    ACCTTTT   CTTACGTGGTAT     ATG CTC CACGCG   
       ||||  |||| |||   |||||| ||||||||||||||||    ||||||||| |||||| |||||||||||||||||||||||     ||||       |||| |||||    |||||||   ||||||||||||     ||| ||| ||||||   C
       TTCC  TTTA GTG   ATGGGG ATCTGATACTGGCTTT    TCTCTGTGT GAATTG TTTGATTCTAGGATAATGGGGGG     AGAA       AACA TAAAA    TGGAAAA   GAATGCACTGTG     TAC GAG GTGCGT   
AAAGATA    CC    A   TTA      A                AAAA         A      C                       -GACT    TCAAAAT    A     CACT       -CA            TGAAG   T   -      TAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End