SE3720334

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11402
  • Solanum lycopersicum
  • SE3720334
  • Mutator
  • M16
  • SL2.40ch10:61144589-61145087
  • TAAATGTAG
  • AGGCCAAATACATAAACAGATCACTAAACTTGTTGGTTTTTTTCCCTCAAGTACCTTAATTATGCTATTTTTCTATTGAATCATTGAACCATCCATAATTTGTTCCTTTTAA

Secondary structure and sequence

TSD    TIR
5'



3'
TAAATGT     A   AC          CAC           GTT          AA              C                C          C                   ACAA    C          ----     ---  CA ---------   T  G   GGGGTACTGATAGAGGATACGCATGTTGTCCAAAACTCATTAGTCCAATTGTTAGTGAAAATATTTCAGAATAATTGTGTTTTACTTC
       AGGCC AAT  ATAAACAGAT   TAAACTTGTTG   TTTTTCCCTC  GTACCTTAATTATG TATTTTTCTATTGAAT ATTGAACCAT CATAATTTGTTCCTTTTAA    ACAC GTTGGTTGAT    GTGGA   AT  G         ATT TT TGA                                                                                        
       ||||| |||  ||||||||||   |||||||||||   ||||||||||  |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||    |||| ||||||||||    |||||   ||  |         ||| || |||                                                                                         
       TCTGG TTG  TATTTGTCTA   ATTTGAACAAC   AAAAGGGGAG  CATGGAGTTGATAC GTAAAAGGATAACTTA TAACTTGGTA GTATTAAATAAGGAAAATT    TGTG CAACCAACTA    TATTC   AA  G         ACA GA AGT                                                                                        
TGTAAAT     C   AC          AGC           -AT          CC              A                A          T                   ----    A          AAAC     AAA  -- ATAACATTT   -  -   TAATACAAGCATAACATTACTAAAACTAACTTCCTTACTTCTGTTTGACATGCTTAGAGTAAAGAAAAGATTATACAAGTTTGCCGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End