SE3710335

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11403
  • Solanum lycopersicum
  • SE3710335
  • Tc1/Mariner
  • St9
  • SL2.40ch01:30339655-30339912
  • TA
  • TACTCCCTCTGTCCACAATTGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
            C  C           -  -  ATACT      A --  GTCCAACA  A   GTCCATTTAAATAATCAAGAAACAAGTAGTCATTTTTTCCAAATTTGCCCTTAATGATAGTCTAGTTCAGTTGA
TACTCCCTCTGT CA AATTGTTTGGC AG AT     AAAAAT G  AC        TT ATT                                                                          
|||||||||||| || ||||||||||| || ||     |||||| |  ||        || |||                                                                          A
ATGAGGGAGGCA GT TTAACAAACAG AC AT     TCCAAT A  TG        TG GGG                                                                          
            C  A           T  A  -----      - CT  --------  -   AGTTCTCTTTAAATTATGTTTCACATTAAACTGATCATATTGGAATAGTTCTTATATTTTTTAGATGTATTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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