SE3720340

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11408
  • Solanum lycopersicum
  • SE3720340
  • Mutator
  • M2
  • SL2.40ch06:30899968-30900292
  • AAAAAATTA
  • GGGATAATGCACAAGTACCCCCTCAACCTATGTCCGAAATCTCAGAGACACACTTATACTATACTAAGTTCCTACTACCCCCTGAACTTATTTTATTAATAATTTTCTACCCCTTTTCGGCCCACTTGGCACTATCTTGTGGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAAATTA    T                  C                --   AGA                      T     C    -                 TAA                       C  T             ---------      CAA
         GGGA AATGCACAAGTACCCCCT AACCTATGTCCGAAAT  CTC   GACACACTTATACTATACTAAG TCCTA TACC CCCTGAACTTATTTTAT   TAATTTTCTACCCCTTTTCGGCC AC TGGCACTATCTTG         TGGGCC   
         |||| |||||||||||||||||| ||||||||||||||||  |||   |||||||||||||||||||||| ||||| |||| |||||||||||||||||   ||||||||||||||||||||||| || |||||||||||||         ||||||   C
         CCCT TTACGTGTTCATGGGGGA TTGGATACGGGCTTTA  GAG   CTGTGTGAATATGATATGATTC AGGAT ATGG GGGACTTGAATAAAATA   ATTAAAAGATGGGGAAAAGCCGG TG ACCGTGATAGAAC         ATTTGG   
ATTTAAAAA    T                  A                AG   --A                      C     A    A                 TTC                       A  C             TTTTTTTTT      TCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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