SE3740354

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11422
  • Solanum lycopersicum
  • SE3740354
  • CACTA
  • Ca2
  • SL2.40ch00:14373434-14373647
  • CAA
  • CACTACAACAAAAACAACTTTTAGCGGCATTAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAA              C    T           A   ATTGA    AATAAAGAGTGCTAAAGTCTTTACCGGCATTAGTTAAGTGTCAGTAGAACCAATGTCGCT
   CACTACAACAAAAA AACT TTAGCGGCATT AAT     CACT                                                            
   |||||||||||||| |||| ||||||||||| |||     ||||                                                            A
   GTGATGTTGTTTTT TTGG AATCGCCGTAA TTA     TTAA                                                            
AAC              A    T           A   -AGAA    CGGCGATTTATACATAAAAATCGCCGTTAACAGTGTGAAACATATACATGGATTTCGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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