SE3720361

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11429
  • Solanum lycopersicum
  • SE3720361
  • Mutator
  • M30
  • SL2.40ch05:7619267-7619618
  • AAAATAATG
  • TGGGATAAGGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
 AAAATAA     -T      AAATATA    A                     AT  C   CTA                                                          CACT      -AAAG   AAATAATGACA    G  C   A            ACT      A
        TGGGA  AAGGAC       CCCC AACTATCGTAAATGGTATGCA  TA CAT   TCGTACTTTTGGGACATTGGTGCTCCTGTCGTCCAAAAACTAGAGCATATATGCCCTT    CTAATG     ACT           TGTG CA AAT TTATCCGTCGAT   ATATTT 
        |||||  ||||||       |||| |||||||||||||||||||||  || |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||     |||           |||| || ||| ||||||||||||   |||||| A
        ACCCT  TTCCTG       GGGG TTGATAGCATTTACCATACGT  AT GTA   AGTATGAAAACCCTGTAACCACGGGGACGGCAGGTTTTTGATCTTGTATATATGGGAA    GATTGC     TGG           GCAC GT TTA AATAGGTGGCTG   TGTAAA 
TAATAAAA     TT      -------    C                     CT  A   AGC                                                          ATAT      CTATA   -----------    A  A   G            GAC      T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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