Plant MITE

SE3720364

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11432
Solanum lycopersicum
SE3720364
Mutator
M23
SL2.40ch03:51126917-51127682
TATTTTTTT
GATAATACTCAATTACGCCCCTAGCCTATAGCCAAAATCCCTGCGACACACCTTATCTTTGATGAGGTCCTATTATCCCCTCCAACTTTTTTTCAAGTAATTAATTACCACTTTCGTGCCTACGTGGCAATAAT

Secondary structure and sequence

TSD TIR

5'

3'

TATTTTTTTGA   A            G             G C                                                            C        A                               AATC   -AA    GAT TGTTTGTTCAACACGCGCCGAGACCCACTTTTTCAGCTTTCGAAAAAGTAACTTTTACACTTCCCAAGTTTGAAAAGCTGGCGCTTTATGTTTTTCAAATTAATTTTATCAAAAAAAATTAAGTAACAAGGAAAGAAAGAGGTAAAGTGCTGCATGTGTGGATCGATTTCAAAGGTTAGAAATTTGATTTCCAACTGAAATTTGATTTTTGATGTTGGATTTT
           GAT ATACTCAATTAC CCCCTAGCCTATA C AAAATCCCTGCGACACACCTTATCTTTGATGAGGTCCTATTATCCCCTCCAACTTTTTTT AAGTAATT ATTACCACTTTCGTGCCTACGTGGCAATAAT    TGA   GGTC   G                                                                                                                                                                                                                               
           ||| |||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    |||   ||||   |                                                                                                                                                                                                                                
           CTA TATGGGTTAATG GGGGATCGGATAT G TTTTAGGGACGCTGTGTGGAATAGAAACTACTCCAGGATAATGGGGGAGGTTGAAAAAAA TTCATTAA TAATGGTGAAAGCACGGATGCACCGTTATTA    ACT   GTGG   G                                                                                                                                                                                                                               
TTTTTTTATCC   C            G             G A                                                            A        A                               --GC   AAA    --- TACATCCCGCGCACTCACGTCTAAAACCGATTGTTACTGGTTATTTTCAATCGGTGCACAGTTTCGTTAAACTTTTTTTTTAGTTTTTATTTAAAATAACAAAGAGAGTTTTCGTCAAGAAGAAGGAGAAAACTTTTTTATTGGGGTAAAAGTACCAAGAAGTAAAAACTTTTTCGAGGTAGGTAATAATTGATAGTTTTAGGTTGTAGCTTTTAATTAATAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720364

TATTTTTTTGAGATAATACTCAATTACGCCCCTAGCCTATAGCCAAAATCCCTGCGACACACCTTATCTTTGATGAGGTCCTATTATCCCCTCCAACTTTTTTTCAAGTAATTAATTACCACTTTCGTGCCTACGTGGCAATAATAATCTGAAAGGTCGATGTGTTTGTTCAACACGCGCCGAGACCCACTTTTTCAGCTTTCGAAAAAGTAACTTTTACACTTCCCAAGTTTGAAAAGCTGGCGCTTTATGTTTTTCAAATTAATTTTATCAAAAAAAATTAAGTAACAAGGAAAGAAAGAGGTAAAGTGCTGCATGTGTGGATCGATTTCAAAGGTTAGAAATTTGATTTCCAACTGAAATTTGATTTTTGATGTTGGATTTTGATAATTAATTTTCGATGTTGGATTTTGATAGTTAATAATGGATGGAGCTTTTTCAAAAATGAAGAACCATGAAAATGGGGTTATTTTTTCAAAAGAGGAAGAAGAACTGCTTTTGAGAGAAACAATAAAATTTATTTTTGATTTTTTTTTCAAATTGCTTTGACACGTGGCTAACTTTTATTGGTCATTGTTAGCCAAAATCTGCACTCACGCGCCCTACATGGGTGAAATCACGATTATTGCCACGTAGGCACGAAAGTGGTAATAAATTACTTAAAAAAAAGTTGGAGGGGGTAATAGGACCTCATCAAAGATAAGGTGTGTCGCAGGGATTTTAGGTATAGGCTAGGGGGGTAATTGGGTATCATCCCTATTTTTTT

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