SE3720368

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11436
  • Solanum lycopersicum
  • SE3720368
  • Mutator
  • M16
  • SL2.40ch07:32078705-32079202
  • ATTTGATTA
  • TGATTAGGCCAAATACATAAGCAGATTCCTAAATTTGTTGGGTTTTTTCTCTCAGGTACCTCAACTACGTCATTTTCCTATTGAATCATTGAACCTCCATAATTTGTTCCGTTTAAACAAACACTGTTGACTGAT

Secondary structure and sequence

TSD    TIR
5'



3'
ATT      ---                      C             T          A                      C                - C               G      CAA         AC       GAACCA  -T      GGGGTATTGATAGAGGATACATATGTTGTTCTAGAACTCATTAATCCAATTGATAATGAAAATGCTCGAGAATAATTGTGTTTTACTTAAGTCATTT
   TGATTA   GGCCAAATACATAAGCAGATTC TAAATTTGTTGGG TTTTTCTCTC GGTACCTCAACTACGTCATTTT CTATTGAATCATTGAA C TCCATAATTTGTTCC TTTAAA   ACACTGTTG  TGATGTG      GA  TTGTGA                                                                                                 
   ||||||   |||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| ||||||   |||||||||  |||||||      ||  ||||||                                                                                                  
   ATTAGT   CCGGTTTATGTATTTGTCTAGG ATTTGAACAACCC AAAAAGGGAG TCATGGAGTTGATGTAGTAAAA GATGACTTAGTAACTT G GGGTATTAAACAAGG AAATTT   TGTGACAAC  ACTATAA      CT  CCGAAA                                                                                                 
         TTA                      A             T          C                      A                A T               -      ---         CA       ------  AG      AGATAACATTTACGGAAGTTAACACAAGCTTAACATTATAAAACTAACTTCCTTACTTCTGTTTGGCACAATCAGATTAAACAAAAGATTACACAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End