Plant MITE

SE3720370

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11438
Solanum lycopersicum
SE3720370
Mutator
M9
SL2.40ch00:6795463-6795786
ATTTTTATG
GGCATAATACATATATTGAATTCTAAACTTGACTTCAAATT

Secondary structure and sequence

TSD TIR

5'

3'

ATTTTTAT             TAT  AA    -A      A T       TTAACTT  A   C       CATAA        CAA      T    ATCCAACTTTTA        A       A          GC  CAA    C  AAGACACCACGT
        GGCATAATACATA   TG  TTCT  AACTTG C TCAAATT       TG CCT CAACTTT     TGCACAAA   ACATTT AACT            AATAAATA GCACATG GTCCTACATG  CA   TACA GT            
        |||||||||||||   ||  ||||  |||||| | |||||||       || ||| |||||||     ||||||||   |||||| ||||            |||||||| ||||||| ||||||||||  ||   |||| ||            A
        CCGTATTATGTAT   AC  AGGA  TTGAAC G AGTTTAA       AC GGA GTTGAAA     ACGTGTTT   TGTGAA TTGA            TTGTTTAT TGTGTGT CAGGATGTAC  GT   ATGT CA            
ATTTTTAT             -TT  AC    AA      C T       TGTAAAT  A   A       CTTAC        ATC      T    ATATATTTCAAC        C       A          -A  AGG    A  ATAAAAAACAGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720370

ATTTTTATGGCATAATACATATATTGAATTCTAAACTTGACTTCAAATTTTAACTTTGACCTCCAACTTTCATAATGCACAAACAAACATTTTAACTATCCAACTTTTAAATAAATAAGCACATGAGTCCTACATGGCCACAATACACGTAAGACACCACGTAGGACAAAAAATAACATGTAGGATGACATGTAGGACATGTGTGTCTATTTGTTCAACTTTATATAAGTTTAAGTGTCTATTTGTGCACATTCAAAGTTGAAGGACATAAATGTAATTTGATGCCAAGTTAAAGGACACATTTATGTATTATGCCTATTTTTA

Copy Cancel