SE3720371

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11439
  • Solanum lycopersicum
  • SE3720371
  • Mutator
  • M9
  • SL2.40ch11:9381895-9382217
  • TTTTAAAAG
  • AAAAGGCATAATACATATATTGGACCCTAAACTTAGCTTCAAAATTCAATTTTGACCTCGAACTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTT                 TAT  GAC   -A     A        AT   -    -  A   CG      CATAA        G     C  T    ATCCAACTTTTA        A    TTGA          G  CAA   -----------------      GA
    AAAAGGCATAATACATA   TG   CCT  AACTT GCTTCAAA  TCA ATTT TG CCT  AACTTT     TGCACAAA AGGCA TT AACT            AATAAATA ACAC    GTCCTACATG CA   TAC                 ACGTAG  
    |||||||||||||||||   ||   |||  ||||| ||||||||  ||| |||| || |||  ||||||     |||||||| ||||| || ||||            |||||||| ||||    |||||||||| ||   |||                 ||||||   
    TTTTCCGTATTATGTAT   AC   GGA  TTGAA TGAAGTTT  AGT TAAA AC GGA  TTGAAA     ACGTGTTT TTTGT AA TTGA            TTGTTTAT TGTG    CAGGATGTAC GT   ATG                 TGCATC  
AAAT                 -TT  ACA   AA     C        --   A    T  G   AG      CCTAC        A     A  T    ACATATTTCAAC        C    TGTA          A  AGG   TACAGTAAAAAACAGGA      AC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End