SE3720373

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11441
  • Solanum lycopersicum
  • SE3720373
  • Mutator
  • M30
  • SL2.40ch04:46803190-46803544
  • TTATTATTA
  • TATTAGTAGGAAAAAAGGACATATATATCCTCGAACTATCGCAAATGGTAATCAGATACCCCCCGTCATACTTTAGGGACATTGGTGCCCCTGCAGTCCAAAAACTAAAACATATATACCCTTTATACTAACAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAT        -  A          T            A      C        AT     AC  CC                             GCA   C        AAA A     A      ATA        --------CATAC       --                 C   AC
    TATTAGTA GG AAAAAGGACA ATATATCCTCGA CTATCG AAATGGTA  CAGAT  CC  CGTCATACTTTAGGGACATTGGTGCCCCT   GTC AAAAACTA   C TATAT CCCTTT   CTAACAGA             ACGTGTC  ATAATCTTATCTATCGA CCG  
    |||||||| || |||||||||| |||||||||||| |||||| ||||||||  |||||  ||  |||||||||||||||||||||||||||||   ||| ||||||||   | ||||| ||||||   ||||||||             |||||||  ||||||||||||||||| |||   
    ATGATTAT CC TTTTTCCTGT TATATGGGGGCT GATAGC TTTACCAT  GTCTA  GG  GCAGTATGAAATCTCTGTAACCACGGGGA   CAG TTTTTGAT   G ATATA GGGAAG   GATTGTCT             TGTACAG  TGTTAGAATAGGTAGCT GGC  
            T  C          T            C      A        AC     CA  AA                             AGG   T        CTC C     C      CGA        TCTAATTTATCCC       CG                 A   TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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