SE3730374

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11442
  • Solanum lycopersicum
  • SE3730374
  • hAT
  • Hat20
  • SL2.40ch08:47570867-47571566
  • CCCATTGA
  • CATTGATAGAACTGTCAAAATAGGTTTTGTCC

Secondary structure and sequence

TSD    TIR
5'



3'
CC  T  -A          A    A  TT        -  T      -----    CC   CATTGAATTAAGTGGGGTTCGGCCTAATTTTTTTGGCCCATTTAGGAATGAGACTTTTTAGTCCAGCTTCATTTGGTCTGCTAACCTTGTAGGCCCAACCCGCAAGCCTCAAATGTCAGCCTCTAAACTATGAATATTTTTTAAAAAAATTATAGATATATTTTTAGTAATGACTTATTTGTAAAATTTTTATCAATAGATATTTTAAAAAATAAAAAATCAAGTCTTTTAAACTAGCTAGTTTTTGTGTGCGAGGAATGGTGGAATTTTCAATATTTTCCCGCAAAGTCTTAAG
  CA TG  TAGAACTGTC AAAT GG  TTGTCCGT TA GCCGGC     CCAC  AAT                                                                                                                                                                                                                                                                                                       
  || ||  |||||||||| |||| ||  |||||||| || ||||||     ||||  |||                                                                                                                                                                                                                                                                                                       T
  GT AC  ATCTTGACAG TTTA CC  GACAGGGT GG GTTGGG     CGGA  TCT                                                                                                                                                                                                                                                                                                       
 A  T  CC          C    -  -T        T  -      ATTAA    --   TTCAATTTAACTTACTCTACCCTACTGGGAAAATTAATTTCCAAGATATTTTAACGTAGGATTCGCTCGGGAATCGCCCGGTGCTCAACCTTGCTTAATTGGGAAGTTATTTTCTTACTTTTTATAATGATAGAATCTTTCTCATAGATTCTCATAACTTACAATTGCAGATACTTATGCAGAAGTTAATGTATGTTTAAAAATAAATACGTAGTGTGTGAAGCCACTTATGAATATTTTTGTGTAAATATTTAGTGTGTGAAGTTAATTATGAACGTTCTTATGTATTATCAGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End