SE3730377

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11445
  • Solanum lycopersicum
  • SE3730377
  • hAT
  • Hat5
  • SL2.40ch01:43406578-43407094
  • GTTGTTAG
  • AGTAGGGGTGTCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTGTT G             -T    GGATTGGGTTGAAATTGGAAATATTACAATGGGTTGAATAGAAATCGGGTTGGGTCTTGACCCGCCCAAGTTTACTTTGGGCTCAAATGGGCTAACAAACGGGTTGGGTCTTGACTCGCCCCATTTGACCCGATTAATTTCAATAATTTAACATATTGATATTTAACTTTTATAATCACAATTTGAATTTTTCGCTCAAGAATTTTTTGTTTTAAAAGTAAGAAAATGGATA
      A TAGGGGTGTCAAA  GGCC                                                                                                                                                                                                                                        
      | |||||||||||||  ||||                                                                                                                                                                                                                                         
      T ATCCCCACAGTTT  ACTT                                                                                                                                                                                                                                        
GATTGT G             TT    GGGTTTGTATCCATTGGGTGGGTTGGGGGGGTCTTAAACTTCCCAACCTGAGTTCTATTAAACTTAACCCGAGTTAGAGTTGTATAAGTTCGAAATTGGGTAAACTTCTCTTAAGAGTTAACTCGGGTTAACTTAGAGGTTAAAGTAGGGCAAAATTTTGAAAAAGAATTCTATACAAGAATATTTAACTTCCATACTTAATAATAGATACGTTGTAGAAATTCCTAAATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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