Plant MITE

SE3720378

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11446
Solanum lycopersicum
SE3720378
Mutator
M14
SL2.40ch04:63172154-63172484
GCTCATTAA
GGGAAAATGCACAAGTATCCCCCTAGACTATGATCGAAATCCCAGAGACACATTAACTAAACTAAGGTCTTATTACCCCCC

Secondary structure and sequence

TSD TIR

5'

3'

GCTCATTAA                       -                 CC       A   --                 T   A CC   CCCCCCTC       A        G      -G          T G        G     -AAATAT   T   A  CCT
         GGGAAAATGCACAAGTATCCCCC TAGACTATGATCGAAAT  CAGAGAC CAT  TAACTAAACTAAGGTCT ATT C  CCC        TAAACTT TTTTTTTG TAATTT  TGCACCTTTT G CTTACGTG CATGC       CTC CAC CA   
         ||||||||||||||||||||||| |||||||||||||||||  ||||||| |||  ||||||||||||||||| ||| |  |||        ||||||| |||||||| ||||||  |||||||||| | |||||||| |||||       ||| ||| ||   C
         CCCTTTTACGTGTTCATGGGGGG ATCTGATACTAGCTTTA  GTCTTTG GTG  ATTGATTTGATTCCAGG TAA G  GGG        ATTTGAA AAAAAAAC ATTAAA  ACGTGGAAAA C GAATGCAC GTGTG       GAG GTG GT   
AATTACTCG                       T                 AA       C   GA                 C   C AA   --------       A        -      AA          - A        A     ATGCACT   -   C  TAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720378

GCTCATTAAGGGAAAATGCACAAGTATCCCCCTAGACTATGATCGAAATCCCAGAGACACATTAACTAAACTAAGGTCTTATTACCCCCCCCCCCCTCTAAACTTATTTTTTTGGTAATTTGTGCACCTTTTTGGCTTACGTGGCATGCAAATATCTCTCACACACCTCAATTGCGTGGAGTCACGTAGTGTGACACGTAAGACAAAAGGTGCAAAAAATTACAAAAAAAAAAGTTTAGGGAAGCAATCGGACCTTAGTTTAGTTAAGGTGCGTTTCTGAAATTTCGATCATAGTCTATGGGGGGTACTTGTGCATTTTCCCGCTCATTAA

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