SE3740389

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11457
  • Solanum lycopersicum
  • SE3740389
  • CACTA
  • Ca2
  • SL2.40ch07:1253232-1253445
  • GAC
  • CCACTACAACAAAAATAATTATTAGCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GA                    A       CAAGTAATTC         --      TATGTATTTTTAGTGGCAATTGACACTCTTTGTATATGTCCCTAAAGCCTTTG
  CCACTACAACAAAAATAATT TTAGCGG          TTAATTGCC  GCTAAA                                                     
  |||||||||||||||||||| |||||||          |||||||||  ||||||                                                     G
  GGTGATGTTGTTTTTATTGG AATCGCC          TTATAACTA  ATTATT                                                     
CA                    A       -----ATAAT         TA      TCTCACAAATTCAGAAATGGCTGTAATAAATTCTCAGTAATCTTAGTTATAGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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