SE3710390

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11458
  • Solanum lycopersicum
  • SE3710390
  • Tc1/Mariner
  • St3
  • SL2.40ch03:14327685-14327935
  • TA
  • TACTCCCTTCGTTTTAAAAAAAATGATCT

Secondary structure and sequence

TSD    TIR
5'



3' 
        T           A        CATTTTCATTTT      ---- T  --   AA   TGATCCCTTTCCTTTTGTACAAATTTTTAACTTTAACTTTCCACGCGGCATGTTTAAGGCCACAAGATTA
TACTCCCT CGTTTTAAAAA AATGATCT            AGTTTG    T TA  AAA  GAA                                                                      
|||||||| ||||||||||| ||||||||            ||||||    | ||  |||  |||                                                                      A
ATGAGGGG GCAAAATTTTT TTACTGGA            AAACTG    T TG  TCA  AAT                                                                      
        -           C        ----------TC      AACC -  TT   --   TCTTTTCTTTCTTTTGAAAAACTAAAACACCAAGATTTGATTTCAATACAGTTTACATGGTTTTATGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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