SE3730398

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11466
  • Solanum lycopersicum
  • SE3730398
  • hAT
  • Hat17
  • SL2.40ch09:2864852-2864988
  • GTGAAAAG
  • AGCTATGTTGCTTAGACTCTTCAAAAATGTCGACGGGTGCGTGTCAGATCCTCCAAAAATAGTGTATTTTTGAAGGATCTGACACGGGTGCGGCAACATTTTTGGAGAGTCCAAGCAACTTAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTGAAA G   T       A                C A  G  G             C        G
      A CTA GTTGCTT GACTCTTCAAAAATGT G CG GT CGTGTCAGATCCT CAAAAATA 
      | ||| ||||||| |||||||||||||||| | || || ||||||||||||| |||||||| T
      T GAT CAACGAA CTGAGAGGTTTTTACA C GC TG GCACAGTCTAGGA GTTTTTAT 
GAAAAG G   T       C                A G  G  G             A        G
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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