SE3750399

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11467
  • Solanum lycopersicum
  • SE3750399
  • PIF/harbinger
  • To4
  • SL2.40ch10:49950101-49950507
  • TTA
  • AGAGCCTGTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT  A  C       CTCA      ---A    -     AACTGATTTAAAAGCTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAACAGTTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTT
  AG GC TGTTTGG    GCTTAA    AGCT GGTCA                                                                                                                                                                      
  || || |||||||    ||||||    |||| |||||                                                                                                                                                                      T
  TC CG GCAAACC    CGAATT    TCGT GAAAT                                                                                                                                                                      
AT  C  A       TACC      ATTT    C     TTTTTCATGAAAATTTTCACGACTTTGAATAAAAATTTTCTTTGTCAATATGCAAACCTATTTTCACGACTTCAACAATACAGTTTGCACTTTTCCCCTTTTACCTTCTTTCTTTACAATCCCAATATACCCATTAAACCTCTAACATATTTTTATAATTCGTGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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