Plant MITE

SE3710403

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11471
Solanum lycopersicum
SE3710403
Tc1/Mariner
St7
SL2.40ch04:38932709-38932960
TA
TACTCCCTCC

Secondary structure and sequence

TSD TIR

5'

3'

          ---      C    -  TGACCTGGTTTGACTTGGCACGGAGTTTAAGAGTATAAAGAAGACTTTTGAATATTGTGGTCCTAAATTAAAGTTAGGTCAAATGTACAAAATTACCCTTT
TACTCCCTCC   GTTTCA AAAG AA                                                                                                     
||||||||||   |||||| |||| ||                                                                                                     G
ATGAGGGAGG   ATTTTT TCTT CT                                                                                                     
          CAA      -    A  AGAAGAAAGGAAAAATCATACAAAGTTTTTCTTACTGGAGAAAGAAAAAAACTATTGTAAAATTAAAGTCGAAAGGTGTACTGTACAAATCCGGTGTTCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710403

TACTCCCTCCGTTTCACAAAGAATGACCTGGTTTGACTTGGCACGGAGTTTAAGAGTATAAAGAAGACTTTTGAATATTGTGGTCCTAAATTAAAGTTAGGTCAAATGTACAAAATTACCCTTTGATCTTGTGGCCTAAACATGTCATGTGGAAAGCTGAAATTAAAATGTTATCAAAAAAAGAAAGAGGTCATTCTTTTTGAAACATACTAAAAAGGAAAGAAGATCATTCTTTTTTAAACGGAGGGAGTA

Copy Cancel