SE3720409

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11477
  • Solanum lycopersicum
  • SE3720409
  • Mutator
  • M33
  • SL2.40ch01:42163816-42164142
  • TATCTAGTA
  • CTAGTAGGCATAATATATTAACATATGACCCTTATCTTGGCTTCAATTGGAAACTATGGCCATTAACTTGGAGTGTGCACAAGCAGACACTTAAATTTGTATAAATTGAAAAAATAGACGCATTCATCTTACATGACACCTTACATGGA

Secondary structure and sequence

TSD    TIR
5'



3'
TAT    -    C         T    TA         T   G        T   -       G  A                     CA  C                 -     A  A          C  C          CCT     ---   AATTT    T
   CTAG TAGG ATAATATAT AACA  TGACCCTTA CTT GCTTCAAT GGA AACTATG CC TTAACTTGGAGTGTGCACAAG  GA ACTTAAATTTGTATAAA TTGAA AA TAGACGCATT AT TTACATGACA   TACAT   GGA     TGTA 
   |||| |||| ||||||||| ||||  ||||||||| ||| |||||||| ||| ||||||| || |||||||||||||||||||||  || ||||||||||||||||| ||||| || |||||||||| || ||||||||||   |||||   |||     |||| C
   GATC ATCC TATTATGTA TTGT  ACTGGGAAT GAA CGAAGTTG CCT TTGATAT GG GGTTGAACCTCACATGTGTTC  CT TGAATTTGAATGTATTT AACTT TT ATCTGTGTAA TA GATGTACTGT   ATGTG   CCT     ACAT 
 AT    T    A         T    --         T   G        -   A       G  A                     AA  C                 T     A  C          A  A          ATT     TAT   GCGGT    C

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End