Plant MITE

SE3710413

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11481
Solanum lycopersicum
SE3710413
Tc1/Mariner
St1
SL2.40ch09:64990103-64990366
TA
TACTCCCTCCGTCCTATATTGTTTGTCAT

Secondary structure and sequence

TSD TIR

5'

3'

    C       C TAT            ---------      TATTTTTAGAGTCAAACTATAAAAACTTCGACTAACATTTTAAGATGTATTTTTTCATCATATTAATATGCAAAAAATTGTAATTTACAGTA
TACT CCTCCGT C   ATTGTTTGTCAT         GATTTT                                                                                            
|||| ||||||| |   ||||||||||||         ||||||                                                                                            A
ATGA GGAGGCA G   TAACAAACAGTA         TAGTTT                                                                                            
    A       A CTT            TAACGCGAA      TCAGTTAAACTAATTAAAAGTTTCCATTTAATCTAGTATAACTAAGCTATAAAATTTGTTTTTTTTAATTTACAAGATTTTGATATACTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710413

TACTCCCTCCGTCCTATATTGTTTGTCATGATTTTTATTTTTAGAGTCAAACTATAAAAACTTCGACTAACATTTTAAGATGTATTTTTTCATCATATTAATATGCAAAAAATTGTAATTTACAGTAATTTTCATATAGTTTTAGAACATTTAATTTTTTTTGTTTAAAATATCGAATCAATATGATCTAATTTACCTTTGAAAATTAATCAAATTGACTTTTGATAAGCGCAATATGACAAACAATTTCGAACGGAGGAAGTA

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