Plant MITE

SE3720416

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11484
Solanum lycopersicum
SE3720416
Mutator
M30
SL2.40ch04:18239348-18239712
GTTTCTTTT
AGGGATAAAGGACAAATATACCCTCCGAACTATCGTAAATGGTACGTAGATACCCTTCATCATACTTTTGGGGCATTGGTGCCCTTGCCGTCCAAAAACTAGAGTATATATGCCCTT

Secondary structure and sequence

TSD TIR

5'

3'

GTTTCTTTT     T  A                C       C          C  A          ATC                               C                A       CCCT      AAA   TAACCAGGG    G  G  A                   A     A
         AGGGA AA GGACAAATATACCCTC GAACTAT GTAAATGGTA GT GATACCCTTC   ATACTTTTGGGGCATTGGTGCCCTTGCCGTC AAAAACTAGAGTATAT TGCCCTT    CTAACG   GAC         ACAC TG CA AATCTTATCCATCGATCCG TATTT 
         ||||| || |||||||||||||||| ||||||| |||||||||| || ||||||||||   ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    ||||||   |||         |||| || || ||||||||||||||||||| ||||| A
         TCCCT TT CTTGTTTATATGGGAG CTTGATA TATTTACCAT CG CTATGGGAAG   TATGAAAACCCTGTAACTACGGGGACGGCAG TTTTTGATCTCGTATA GTGGGAA    GATTGC   CTG         TGTG AC GT TTAGAATAGGTGGCTAGGC GTAAA 
 ATTTTCTT     T  A                -       A          A  C          CAA                               T                C       ATTT      ---   -------TA    A  A  A                   C     T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720416

GTTTCTTTTAGGGATAAAGGACAAATATACCCTCCGAACTATCGTAAATGGTACGTAGATACCCTTCATCATACTTTTGGGGCATTGGTGCCCTTGCCGTCCAAAAACTAGAGTATATATGCCCTTCCCTCTAACGAAAGACTAACCAGGGACACGTGGCAAAATCTTATCCATCGATCCGATATTTAATAAATGCCGGATCGGTGGATAAGATTATGACAAGTGTATGTCCGTTAGTTTAAAGGGTGCATATGCTCTAGTTTTTTGACGGCAGGGGCATCAATGTCCCAAAAGTATAACGAAGGGTATCCGCATACCATTTATAATAGTTCGAGGGTATATTTGTTCATTTTCCCTTTCTTTTA

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