SE3730418

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11486
  • Solanum lycopersicum
  • SE3730418
  • hAT
  • Hat22
  • SL2.40ch01:79280245-79280948
  • CCACTAAT
  • TAGGGGTGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
CCACTAAT     G    CATC    -------       ----    ATTTTATGTATTATCCGTTTGATTTATCGATTTTTAAATAAGTTAACCCGATAACAAACCAATAAGATATTATTTATTGATTTTCACTTTGTCGGTTTTTGATAGTTATCGGTTTACCCAATAAGAAAATATCCGTAAAATATTATATAACTTCTTACTTAGCTAAATATAGTACGAAGGTTATAATTACATGTCACCGCCAAAACATAGTACAGACCTTCACAAACTTGCAAATGCTACAACCTACAATTACAAACTAAAAAAATCAACTAGTCCAACAAGATTAAACTAAAACTAAAACGAAAATCA
        TAGGG TGTG    AGTC       GGTTCGG    TTCG                                                                                                                                                                                                                                                                                                                     
        ||||| ||||    ||||       |||||||    ||||                                                                                                                                                                                                                                                                                                                     A
        ATCCC ACAC    TTAG       AGTTATT    TTAG                                                                                                                                                                                                                                                                                                                     
TAATCACC     A    TATT    TTTAACT       TTAC    CTTTTTTTATAATAACCTAACAACAATAACCCACTAACCTAATAACTCAAAAATTACCCAAATATTTTCCTTCAATAACCCAATAACCAAGCTATAGCTTAAAATGATAACCCAATAACCCATTTGGCTATTGGGTTATTCTATCATTATTAAATGATAAAATGGGAAGGATTATTAAATTATATATTGATCTGTGATATTGATATAGTTTAATAATTATGAGATAGATGAAGTGTGATCCGACGAAATGATCAAAAATAACAAATGATTTTTGGATTTTTAATTACATTCCAAAGCGTCAACATCGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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