SE3720419

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11487
  • Solanum lycopersicum
  • SE3720419
  • Mutator
  • M9
  • SL2.40ch11:36220561-36220883
  • TATTCTAAT
  • GGCATAATACATAACCCTTAACTTGACGTTAGTTGGCAACTGT

Secondary structure and sequence

TSD    TIR
5'



3'
TATTCTAAT         C   ------  C         AC                ATATGA                 CAC      AT             G            A         TC             CCC      -AAA  T      C
         GGCATAATA ATA      AC CTTAACTTG  GTTAGTTGGCAACTGT      CCTTAACTTTAGATGTG   AAGTAG  ACTTAAATTTGTA AAAATTGAACAA TAGACGCAT  ATCCTACATGGCA   TGCATG    AT TTGTGT 
         ||||||||| |||      || |||||||||  ||||||||||||||||      |||||||||||||||||   ||||||  ||||||||||||| |||||||||||| |||||||||  |||||||||||||   ||||||    || |||||| C
         CCGTATTAT TAT      TG GAATTGAAC  CAGTCAACTGTTGATA      GGAATTGAAATCTATAT   TTCATC  TGAATTTGAACAT TTTTAACTTGTT ATTTGTGTG  TAGGATGTACTGT   ATGTGT    TG AGTACA 
TAATCTTAT         A   TTATAC  A         CA                ---CCG                 TTA      CT             A            C         TA             ACT      ATCC  C      T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End