SE3730421

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11489
  • Solanum lycopersicum
  • SE3730421
  • hAT
  • Hat17
  • SL2.40ch01:75637847-75637982
  • CCAAAAAA
  • CTAAGTTGCTCGGACTCAACAAAAATGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CCAAAAAA   A      C   C  AA          GCCGCACCC    C        A       C
        CTA GTTGCT GGA TC  CAAAAATGTT         GTGT GGATCCTT AGAAATG 
        ||| |||||| ||| ||  ||||||||||         |||| |||||||| ||||||| A
        GAT CAACGA CTT AG  GTTTTTACAG         CACA CCTAGGAA TTTTTAT 
AAAAAACC   A      A   -  AA          TAACCTACA    A        G       C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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