SE3720424

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11492
  • Solanum lycopersicum
  • SE3720424
  • Mutator
  • M11
  • SL2.40ch12:32183012-32183433
  • GAGTGAAGA
  • GAGGTTTTAACCAAACTAAGTCATTATATAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
GAGTGAAGAG   G                             CCATTC      A                                            C   A             A  A                        C  C  A               ---CA          AAACGTTACTCACAGTAACGTTTTAGGAGT
          GAG TTTTAACCAAACTAAGTCATTATATAAAG      ATCAAA TAATATGTTTTTCTAAAATTTTACAAAACTAGTATAAACGTATT CAC GTAACGTTTTAGG TA ATTTTATTTTTTAAAAGTTGATGG AT AG TTGATATACGTTACT     CAGTATCCTA                              
          ||| |||||||||||||||||||||||||||||      |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||||||||||||||| || || |||||||||||||||     ||||||||||                               
          CTT AAAATTGGTTTGATTCAGTAATATATTTT      TAGTTT ATTATATAAAAAGATTTTAAAATGTTTTGATCATATTTGCATAA GTG CATTGCAAAATCC AT TAAAATAAAAAATTTTTGATTGTC TA TC AACTATATGCAATGA     ATTGCAAAAT                              
 AGAAGTGAG   A                             ATAAAA      C                                            A   C             C  A                        A  A  C               CATTC          GAAAATTTTGTAATAAAAGTCATTGTAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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