Plant MITE

SE3720426

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11494
Solanum lycopersicum
SE3720426
Mutator
M9
SL2.40ch01:5757096-5757407
TTCTCTTAA
AAGGCATAATACATAAATGTGCCCTTTAACTTGACTTCAAATCACATTTATGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACT

Secondary structure and sequence

TSD TIR

5'

3'

TTCTCTT           C   -AA  T     TT       C       -CAC    A  C           G AT                  A    TGTA   AG     -C            AT          T   CT     ATCATTTT
       AAGGCATAATA ATA   TG GCCCT  AACTTGA TTCAAAT    ATTT TG CCTTCAACTTT G  GTGCACAAATAGACACTT AACT    TAA  TTGAA  AAATAGACACAT  GTCCTACATG CAT  TACAT        
       ||||||||||| |||   || |||||  ||||||| |||||||    |||| || ||||||||||| |  |||||||||||||||||| ||||    |||  |||||  ||||||||||||  |||||||||| |||  |||||        T
       TTCCGTATTAT TAT   AC TGGGA  TTGAACT AAGTTTA    TGAA AC GGAGGTTGAAA T  TACGTGTTTGTCTGTGAA TTGA    GTT  AATTT  TTTATTTGTGTA  CAGGATGTAC GTG  ATGTG        
 ATTCTC           A   ATA  C     -T       A       AAAT    -  T           G GT                  A    -TAG   GA     TA            CT          C   TT     CATCCTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720426

TTCTCTTAAGGCATAATACATAAATGTGCCCTTTAACTTGACTTCAAATCACATTTATGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAACAAATAGACACATATGTCCTACATGTCATCTTACATATCATTTTTTGTCCTACGTGTATTGTGCCATGTAGGACTCATGTGTTTATTTATTTTAAAGTTGGATAGTTAAAGTGTCTGTTTGTGCATTGTGAAAGTTGGAGGTCAAAGTTAAAATTTGAAATCAAGTTTAGGGTCCAATATATATATTATGCCTTCTCTTA

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