SE3730429

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11497
  • Solanum lycopersicum
  • SE3730429
  • hAT
  • Hat23
  • SL2.40ch10:1947246-1947380
  • GCTAACAC
  • CCTATGTGGGTTGCACTCTTCAAAAATGTCTATGGGTGCACGTCGGATACTACAAAAGTAGTGCATTTGAAGAATCGGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
GCTAACA       G G   C           A   CTA  GG     ----   G   A  A    A  A
       CCTATGT G TTG ACTCTTCAAAA TGT   TG  TGCAC    GTC GAT CT CAAA GT 
       ||||||| | ||| ||||||||||| |||   ||  |||||    ||| ||| || |||| || G
       GGATACA C AGC TGAGAGGTTTT ACA   AC  GCGTG    CAG CTA GA GTTT CG 
CACAATC       A G   C           A   ---  -A     GGTA   G   A  A    A  T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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