SE3720435

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11503
  • Solanum lycopersicum
  • SE3720435
  • Mutator
  • M36
  • SL2.40ch07:7387210-7387427
  • TAACTATTA
  • TTAGGAAAAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAACTA     A      ATCTC       CT  --      AGC            TA         A      TAT       G     CCCC    -   -C     AATA
      TTAGG AAAAGG     AAAAATA  TT  AACTTT   CGAAATTATTGT  TACGATATC AATTTT   GAGGACC TTTAC    CCTT AAC  TTTAA    
      ||||| ||||||     |||||||  ||  ||||||   ||||||||||||  ||||||||| ||||||   ||||||| |||||    |||| |||  |||||    C
      AATCC TTTTCC     TTTTTAT  AA  TTGAAA   GCTTTAATAGTA  ATGCTATAG TTGAAA   TTCCTGG AAATG    GGAA TTG  AAATT    
ATTATC     C      --CAA       AT  AC      CTA            --         C      CTT       A     ---A    C   AT     ATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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