SE3740436

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11504
  • Solanum lycopersicum
  • SE3740436
  • CACTA
  • Ca3
  • SL2.40ch08:2483622-2483763
  • TTA
  • ACACTACAAGAAAAGTATGAATTACATGAGGATTTTCTTGGGATTAGTATAAAAATCCGTAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      C       G                     C      -       A     CC   AA   CT
  ACACTA AAGAAAA TATGAATTACATGAGGATTTT TTGGGA TTAGTAT AAAAT  GTA  AAA  
  |||||| ||||||| ||||||||||||||||||||| |||||| ||||||| |||||  |||  |||  T
  TGTGAT TTCTTTT ATACTTAATGTACTCCTAAAA AACCCT AATCATA TTTTA  CGT  TTT  
AT      A       A                     A      T       C     AA   CC   TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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