SE3720441

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11509
  • Solanum lycopersicum
  • SE3720441
  • Mutator
  • M9
  • SL2.40ch02:11565477-11565799
  • TCTTTAAAA
  • TTTAAAAGGCATAATACATAAATGTGCCCTTTAACTTGGCCTCAAATCACATTTATGCCCTTCAACTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TC      -              A   T C    T        CTC    -CAC    A  C  T        GAAT            A          TGTATAAAG     C            AT  CC      T   CT       -------     TTTG
  TTTAAA AGGCATAATACATA ATG G CCTT AACTTGGC   AAAT    ATTT TG CC TCAACTTT    GTGCACAAATAG CACTTTAACT         TTGAA AAATAGACACAT  GT  TACATG CAT  TACATGT       CATGT    
  |||||| |||||||||||||| ||| | |||| ||||||||   ||||    |||| || || ||||||||    |||||||||||| ||||||||||         ||||| ||||||||||||  ||  |||||| |||  |||||||       |||||     
  AAATTT TCCGTATTATGTAT TAC C GGAA TTGAACCG   TTTA    TGAA AC GG GGTTGAAA    TACGTGTTTGTC GTGAAATTGA         AATTT TTTATTTGTGTA  CA  ATGTAC GTG  ATGTGCA       GTGCA    
 A      C              A   - T    T        AAA    AAAT    -  T  T        GTAT            C          TAGGTTGAA     A            CT  -C      C   TT       TCCTGTG     TCCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End