SE3720442

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11510
  • Solanum lycopersicum
  • SE3720442
  • Mutator
  • M16
  • SL2.40ch03:14148625-14149123
  • TTTATTTTG
  • GGGCCAAATACATAAACAAATCCCTAAACTTGTTGGGTTTTTTCCCTCGGGTACCTTAACTAAGTCATTTTTCTATTGAATCATTGAACCACCCATAATTTATTCCTTTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATTTT               A  A                         C    G    C       A                         C A          -A          ACACT      TGATTTTGATCGGCTTTTCTATTGTAAATGCCTTTAATTGTGCTCGAATTATAATAATTTTGATTGAAGGAATGAATACAAACCGTGTTAGTCTCATTTGTTTTCTAATGTGTTCAAATGA
        GGGCCAAATACATAA CA ATCCCTAAACTTGTTGGGTTTTTTC CTCG GTAC TTAACTA GTCATTTTTCTATTGAATCATTGAA C CCCATAATTT  TTCCTTTAAA     GTTGGT                                                                                                                         
        ||||||||||||||| || ||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||| | ||||||||||  ||||||||||     ||||||                                                                                                                          
        TCCGGTTTATGTATT GT TAGGGATTTGAACAACCCAAAAAAG GAGT CATG AGTTGAT CAGTAAAAGGATAACTTAGTAACTT G GGGTATTAAA  AAGGAAATTT     GTTTGT                                                                                                                         
GTTTTATT               C  C                         A    A    A       G                         A -          CA          -----      TCCAACAGACTACACCTTGGTCTAAATACTCCCCATAACGATCTCCTATGTATATAACAAGGTGTTGAGTAATCAGGTTAACTAACATTTTTACAAGCTCTTATTAACACAAAATGAATTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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