Plant MITE

SE3740447

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11515
Solanum lycopersicum
SE3740447
CACTA
Ca2
SL2.40ch05:10562654-10562867
TAT
CACTACAACAAAAATGACCATTAGCGGTATTTAAT

Secondary structure and sequence

TSD TIR

5'

3'

TAT                 CCA           T   TCTTA    C     ----------      -   TTTT  C  AAATTTTCACTCTTTGTATATGTCCCTAAAGCCTT
   CACTACAACAAAAATGA   TTAGCGGTATT AAT     ATTG CGCTA          GATATG TAT    AG AG                                   
   |||||||||||||||||   ||||||||||| |||     |||| |||||          |||||| |||    || ||                                    
   GTGATGTTGTTTTTATT   AATCGCCGTAA TTA     TAAC GTGAT          GATTTT GAA    AT GC                                   
TAT                 TAA           T   -----    T     TATTTCTCAC      A   ----  G  CGTAATCAATTCACAGTAATCTTGGTTACAGCGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3740447

TATCACTACAACAAAAATGACCATTAGCGGTATTTAATTCTTAATTGCCGCTAGATATGTATTTTTAGCAGAAATTTTCACTCTTTGTATATGTCCCTAAAGCCTTTAGCGACATTGGTTCTAATGACACTTAACTAATGCCGGTAAAGATTTTAGCACTCTTTATTAGTGTCAATATTTAATGCCGCTAAAATTTATTTTTGTTGTAGTGTAT

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