SE3730448

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11516
  • Solanum lycopersicum
  • SE3730448
  • hAT
  • Hat25
  • SL2.40ch08:55203519-55203702
  • ATTGCATA
  • TGCATACAGTGGCGGATGCACATTCAAGTGCATGGGTGCGTGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
AT    TA           G  --CA   -A   GC        G G   ACACATTAC        ACAAG     TATAATT   A G   ATG
  TGCA  CAGTGGCGGAT CA    TTC  AGT  ATGGGTGC T AGC         ATTTGGAG     ACTAA       TGT T AAT   
  ||||  ||||||||||| ||    |||  |||  |||||||| | |||         ||||||||     |||||       ||| | |||   T
  ACGT  GTCACCGCCTA GT    AAG  TCA  TACCCACG A TTG         TAAACTTC     TGGTT       ACG A TTA   
 T    TA           G  CTTA   AA   -A        - G   -ATAAACAT        AACCA     -TTACCT   - G   AAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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