Plant MITE

SE3710453

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11521
Solanum lycopersicum
SE3710453
Tc1/Mariner
St5
SL2.40ch01:88308752-88309014
N.A.
ACTACCTCCGTCCCTAAGTATTTGTCCACTTTT

Secondary structure and sequence

TSD TIR

5'

3'

 T   A    C      AAG               --CTTTTTAT     TCCCTATTTACTCGTCCATTTTGACAAATCAAGAAATGACAATTTTTTTGCCTATTATACCCACAATTAAATGACTAATTACT
  ACT CCTC GTCCCT   TATTTGTCCACTTTT          AGTAG                                                                                   
  ||| |||| ||||||   |||||||||||||||          |||||                                                                                    
  TGA GGAG CAGGGA   ATGAACAGGTGAAAA          TGGAT                                                                                   
AC   G    A      AAA               CTTAACCGTG     AATTCTTTTATTAATTACTGCATCTTCAAATGGTAAAATAGGGATAATTAATACTTCACCTACTTTTCAAAATGTAAAAAGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710453

TACTACCTCCGTCCCTAAGTATTTGTCCACTTTTCTTTTTATAGTAGTCCCTATTTACTCGTCCATTTTGACAAATCAAGAAATGACAATTTTTTTGCCTATTATACCCACAATTAAATGACTAATTACTTTGAAAAATGTAAAACTTTTCATCCACTTCATAATTAATAGGGATAAAATGGTAAACTTCTACGTCATTAATTATTTTCTTAATAGGTGTGCCAATTCAAAAGTGGACAAGTAAAAAGGGACAGAGGGAGTCA

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