SE3730454

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11522
  • Solanum lycopersicum
  • SE3730454
  • hAT
  • Hat26
  • SL2.40ch02:11545474-11545941
  • TATAAGTC
  • AGTCTAAATTGCTCGGACT

Secondary structure and sequence

TSD    TIR
5'



3' 
   TATA  T    A           CTTTAACTTTC     C CACCC  G       ---AA        T   A CGGGATCCATACCCAATCTGGTCAACCGTTTTAGGTACTTTGACCAAATTTGAGGAAGAAATTCTGGACAGATTCAATGAATTCTTTAATCTAAACAAGACCTAAGGTGAAATTGAAGAAATGGATACCTTGTATATATAAATTTCTATTATCACTCCCTTTCGTTT
       AG CTAA TTGCTCGGACT           GGTGC G     GT TCGACAC     CGTGGGTG GGG G                                                                                                                                                                       
       || |||| |||||||||||           ||||| |     || |||||||     |||||||| ||| |                                                                                                                                                                       T
       TC GATT AACGAGCCTGA           CCACG C     CA AGCTGTG     GTCTAGAT CTC C                                                                                                                                                                       
TTGAATA  -    C           ---------AC     T -----  A       CCCAC        -   - AGCCTAGGAGATACTAGATTTACAATTCTAAGCTCCTATGTCTAGATACGTACCTATTCCCACGTCCCTAAGCAGATTTTTATCTCAATATTGCAAATTTAATACTTTATAACATACTTTTTCAAATCCTCTTTTATAACTAGTTCTCCTCCTAGACCATTCGTGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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