Plant MITE

SE3720455

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11523
Solanum lycopersicum
SE3720455
Mutator
M2
SL2.40ch01:5603252-5603575
ATATATGAG
ATATATGAGGGAAAATGCACAAGTACCCCCTCAACCTATGCCCGAAATCCCAAAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTTAGCCTACGTGACACTAGTTTG

Secondary structure and sequence

TSD TIR

5'

3'

       G     A     A                              C  A                                                    A         C          TA         A     G    AAAAAAAAG     CA
 ATATAT AGGGA AATGC CAAGTACCCCCTCAACCTATGCCCGAAATC CA AGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTAT AGTAATTTT TACCCCTTTT  GCCTACGTG CACTA TTTG         TCAAT  
 |||||| ||||| ||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||  ||||||||| ||||| ||||         |||||   
 TATATA TCCCT TTACG GTTCATGGGGGAGTTGGATACGGGCTTTAG GT TCTGTGTGAATATGATATGATTCCAGGATAATGGGGGGACTTGAATAAAATA TTATTAAAA ATGGGGAAAA  TGGATGCAC GTGAT GAAC         GGTTA  
G      -     A     G                              A  C                                                    A         A          TC         C     A    ----ACTCG     CT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720455

ATATATGAGGGAAAATGCACAAGTACCCCCTCAACCTATGCCCGAAATCCCAAAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTTAGCCTACGTGACACTAGTTTGAAAAAAAAGTCAATCATCATTGGGCTCACAAGATAGTGCCACGTAGGTCTAAAAGGGGTAAAAAATTATTAATAAAATAAGTTCAGGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGAGATTTCGGGCATAGGTTGAGGGGGTACTTGGGCATTATCCCTATATATG

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