SE3720456

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11524
  • Solanum lycopersicum
  • SE3720456
  • Mutator
  • M13
  • SL2.40ch10:392585-393147
  • TAATTTAAG
  • TAATTTAAGGGAAAAGGCTCAAATATGCCATTGAACTTTTAGAAAAGGTTCATTTATGTCATCAGTTAAAAGTTTGACTCATTTATGTCATTACCGTTAAAGAAAAGGCTCATTCATGCCATTATTTTTTAATGGTGGTTTTGCAAAACCACTTTTGACACGTGACCAATCATAATTCGGCCACGTCATCAATTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
   T                                                     G                  A                 C                                                 A      C            A     C       G    C             TTAAT          AAAAACAATAT      -  TATTCAGAATTGACTTTTTTAATTAAAAAAATTGATGACGTGGCCAATTATAATT
TAA TTAAGGGAAAAGGCTCAAATATGCCATTGAACTTTTAGAAAAGGTTCATTTAT TCATCAGTTAAAAGTTTG CTCATTTATGTCATTAC GTTAAAGAAAAGGCTCATTCATGCCATTATTTTTTAATGGTGGTTTTGC AAACCA TTTTGACACGTG CCAAT ATAATTC GCCA GTCATCAATTTTT     AAAAAAATCA           TCAATT TT                                                       
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| ||||||| |||| |||||||||||||     ||||||||||           |||||| ||                                                       C
ATT AATTCCCTTTTCCGAGTTTATACGGTAGCTTGAAAGTCTTTTCCGAGTAAATG GGTAGTCAATTTTCAAAC GAGTAAATACGGTAATG CAATTTTTTTTCCGAGTAAGTACGGTAATAAAAAATTGCCATTAAAACG TTTGGT AAAACTGTGCAC GGTTA TATTAAG CGGT CAGTAGTTAAAAA     TTTTTTTAGT           ATTAAG TT                                                       
   T                                                     A                  C                 A                                                 A      A            A     A       A    A             TTAAT          -----------      A  TTTTTTAACTTAATTCAAAAATAAAAAAAATTAATTTATTTAACTACTGCACCGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End