Plant MITE

SE3740457

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11525
Solanum lycopersicum
SE3740457
CACTA
Ca3
SL2.40ch09:63954369-63954511
TTC
CACTATAAGAAAATCGTTAATTATATGGAGATTTTTCTGGGGATTAGTATGAAAATGCGCAGAAA

Secondary structure and sequence

TSD TIR

5'

3'

TTC              C   A         A                     G     GC    -   TCT
   CACTATAAGAAAAT GTT ATTATATGG GATTTTTCTGGGGATTAGTAT AAAAT  GCAG AAA   
   |||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||  |||| |||    
   GTGATGTTCTTTTA TAA TAATGTACC CTAAAAAGATCCTTAATCATA TTTTA  CGTC TTT   
CTT              A   C         C                     A     AA    C   CAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE3740457

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE3740457