Plant MITE

SE3720465

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11533
Solanum lycopersicum
SE3720465
Mutator
M2
SL2.40ch01:3466468-3466793
AAATAACAA
GGGATAATGCACAAGTACCCCCTCAACCTATGTCCAAAATCTCACAGACACACTTATACTATACTAAGGTCCTATTACCCTCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTTTGCTTACGTGGCACTAGTTTG

Secondary structure and sequence

TSD TIR

5'

3'

AAATAACAA          A               C        A        C                                                    A         C           T               G    AAAAAAAAG     CA
         GGGATAATGC CAAGTACCCCCTCAA CTATGTCC AAATCTCA AGACACACTTATACTATACTAAGGTCCTATTACCCTCCTGAACTTATTTTAT AGTAATTTT TACCCCTTTTT GCTTACGTGGCACTA TTTG         TCAAC  
         |||||||||| ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||         |||||   
         CCCTATTACG GTTCATGGGGGAGTT GATACGGG TTTAGGGT TCTGTGTGAATATGATATGATTCCAGGATAATGGGGGGACTTGAATAAAATA TTATTAAAA ATGGGGAAAAG CGGATGCACCGTGAT GAAC         GGTTG  
AACAATAAA          G               A        C        C                                                    A         A           C               A    ----ACCCA     CT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720465

AAATAACAAGGGATAATGCACAAGTACCCCCTCAACCTATGTCCAAAATCTCACAGACACACTTATACTATACTAAGGTCCTATTACCCTCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTTTGCTTACGTGGCACTAGTTTGAAAAAAAAGTCAACCATCGTTGGACCCACAAGATAGTGCCACGTAGGCCGAAAAGGGGTAAAAAATTATTAATAAAATAAGTTCAGGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGATTGAGGGGGTACTTGGGCATTATCCCAAATAACAA

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